PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00386.1.g00280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 265aa    MW: 29526 Da    PI: 7.193
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00386.1.g00280.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151663148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g W++eEde+l+  ++++G  +W++I++  g+ R++k+c++rw +yl
  Zmw_sc00386.1.g00280.1.am.mk 16 KGLWSPEEDERLASHIARFGVSCWSSIPELTGLQRCGKSCRLRWMNYL 63
                                  678*******************************************97 PP

2Myb_DNA-binding45.81.4e-1469111145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   rgr+++ E++l++ ++k lG+  W+ Ia+ ++ gR+++++k++w+
  Zmw_sc00386.1.g00280.1.am.mk  69 RGRFSQKEEDLIIALHKTLGNS-WSQIAANLP-GRSDNEIKNFWN 111
                                   89******************99.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-23866IPR009057Homeodomain-like
PROSITE profilePS5129416.1371163IPR017930Myb domain
SuperFamilySSF466893.56E-2714110IPR009057Homeodomain-like
SMARTSM007173.4E-111565IPR001005SANT/Myb domain
PfamPF002492.9E-141663IPR001005SANT/Myb domain
CDDcd001677.44E-101963No hitNo description
PROSITE profilePS5129423.64264118IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2567118IPR009057Homeodomain-like
SMARTSM007171.7E-1468116IPR001005SANT/Myb domain
PfamPF002494.9E-1369111IPR001005SANT/Myb domain
CDDcd001678.33E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRAHPCCSE EKKLRKGLWS PEEDERLASH IARFGVSCWS SIPELTGLQR CGKSCRLRWM  60
NYLRPDLKRG RFSQKEEDLI IALHKTLGNS WSQIAANLPG RSDNEIKNFW NARLRKKLRQ  120
REASTAGSKD PAVLRSRHRG EGDERKLQLP SAMFNPLCAA RVEDQPWGTA DHTMVSAVTS  180
STSCEDVVDY TTPGAVIADA HDRRNAAAAA ELQTLSASST EAVGGSEDDF LRAMVEEASH  240
LFGDFYNIDG SQDGRISFWE GHTFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118RLRKKLR
2113119LRKKLRQ
3114120RKKLRQR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968333.11e-111PREDICTED: transcription factor MYB82-like
TrEMBLK3XKX71e-111K3XKX7_SETIT; Uncharacterized protein
STRINGSi002550m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144481725